The design of new proteins (i.e.Antibodies and Enzymes) with specific function is a very complex problem. 

The problem has a great relevance for the pharmaceutical sector and the chemical industries with an expanding market of products and services.

Example of target market: protein therapeutics.

The drug discovery process is characterized by high return of investment and a long, high-cost, low success rate pipeline. To obtain high performance molecule candidates, gives not only advantages against competitors but it reduces cost and waste of resources on later steps.

Patent status

SUBMITTED

Priority Number

102019000009531

Priority Date

19/06/2019

License

ITALY

Market

Sectors: 

pharmaceutical, food and detergent industries,

environmental applications, biopolymer production.

In the next future the integration of high-throughput experiments with AI will drive a disruptive change in the R&D of the Pharmaceutical and Biotechnological sector. 

Aims:

In a first stage our company aims to help organizations that require the  use of data science and advanced analytics in the development of a new product while missing the necessary resources and capabilities.

TAM – total addressable market 

Protein engineering market ~ 2 Billions  

(Pharmaceutical, food and detergent industries, environmental applications, biopolymer production)

SAM – serviceable addressable market 

Protein design sector ~ 700 Millions

SOM – serviceable obtainable market

Pharmaceutical or chemical industry companies with R&D wet labs for protein engineering

Problem

The design of new proteins (i.e.Antibodies and Enzymes) with specific function is a very complex problem. 

The problem has a great relevance for the pharmaceutical sector and the chemical industries with an expanding market of products and services.

Example of target market: protein therapeutics.

The drug discovery process is characterized by high return of investment and a long, high-cost, low success rate pipeline. To obtain high performance molecule candidates, gives not only advantages against competitors but it reduces cost and waste of resources on later steps.

Current technologies limits / Solutions

Directed Evolution

One of the most used approaches is the Directed Evolution, which makes it possible to characterize the functionality of combinatorial libraries of mutants with the aim of selecting the variants with an increased functionality of interest. 

Limitations:

  • Sub-optimal: outcomes with lower performances
  • Local solutions: few molecules candidates screened
  • Fully experimental: does exploit sequencing data information and AI revolution

Innovation trends:

  • High-throughput experiments (parallelization and selectable functions) 
  • Next-gen sequencing method (cost and parallelization)

Killer Application

The lead compound identification and optimization are two crucial step in the Drug Discovery process. During these steps the high-throughput screening experiments are routinely carried out to obtain high-performance compounds.

Proteolabio can be used to obtain higher performance molecule candidates: this gives not only advantages against competitors but it reduces cost and waste of resources on the extremely costly later steps of pre-clinical and clinical studies.

Technology and our solution

A computational method for biological sequence optimization.

The present invention uses an innovative machine-learning method which, starting from library sequencing, produces an accurate statistical modeling of the genotype-fitness association, allowing the construction of models for the generation of new amino acid sequences with biochemical functions of interest.

The core service deliverable by our technology consists of the prediction and generation of optimized sequences by exploiting the information of high-throughput screening experiments such as Directed Evolution.

Advantages

Our technology provides high accuracy prediction of mutational effects that can be exploited to computationally explore the sequence space of the target protein. This allows to perform quick and inexpensive probing of new potential candidates, which allows the client to increase the success rate of discovery or optimization process of a product. At the same time it accelerates the process from the laboratory to the market and it reduces the laboratory waste of resources and costs.

Technological advantages

  • Performances. Several innovative technical advances provide better performances compared to competitor ML solutions
  • Integrability. Benefits from company R&D sector dedicated to optimize and create new biomolecules 
  • Flexibility and generality. The technology enables to target a broad variety of client demands
  • Global solution. Computational screening of all possible protein variants candidates
  • Data-driven. Profits from the increasing amount of available data at a reducing cost of sequencing.

Solutions to market pain

The technological advantages provide: 

  • Higher affinity molecules
  • Reducing costs, wasted resources and time

To give one example of application, in the drug discovery process the lead compound identification and optimization is a crucial step to have valid candidates to enter the extremely costly pre-clinical and clinical studies. To obtain high-performance molecule candidates permits to reduce the cost and waste of resources in later steps of the process.

Roadmap

  • July 2019: Italian patent filing (TRL 3)
  • August 2019: First Partnership
  • November 2020: PoC program start
  • November 2021: Spin-off creation (TRL 5)
  • We started a partnership with an established company in the sector of antibodies therapeutics. The collaboration focuses on the development of a custom algorithm that integrates a partner’s patented experimental platform.
  • We are committed to create a Politecnico spin-off company exploiting the patent and the know-how of the team. 
    • One of the team members will attend an accredited Executive MBA.
    • Conditioned to the success of the PoC program we have the opportunity to receive up to 0.5M of seed investment.
  • We are looking for more partnerships and investors.
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